vendor: Applied patch from NCAR to fix handling of TKE with periodic...

vendor: Applied patch from NCAR to fix handling of TKE with periodic boundaries. This now enables bit-for-bit reproducibility for the em_les compile mode.

Registry/Registry.EM_COMMON

@@ -2917,8 +2917,8 @@ halo      HALO_EM_B2 dyn_em 4:ru_tend,rv_tend
 halo      HALO_EM_C dyn_em    4:u_2,v_2
 halo      HALO_EM_C2 dyn_em    4:ph_2,al,p,mu_2,muts,mudf
 halo      HALO_EM_D dyn_em    24:ru_m,rv_m,ww_m,mut,muts
-halo      HALO_EM_D2_3 dyn_em 24:u_2,v_2,w_2,t_2,ph_2;24:moist,chem,tracer,scalar;4:mu_2,al
-halo      HALO_EM_D2_5 dyn_em 48:u_2,v_2,w_2,t_2,ph_2;24:moist,chem,tracer,scalar;4:mu_2,al
+halo      HALO_EM_D2_3 dyn_em 24:u_2,v_2,w_2,t_2,ph_2;24:moist,chem,tracer,scalar,tke_2;4:mu_2,al
+halo      HALO_EM_D2_5 dyn_em 48:u_2,v_2,w_2,t_2,ph_2;24:moist,chem,tracer,scalar,tke_2;4:mu_2,al
 halo      HALO_EM_D3_3 dyn_em 24:u_1,u_2,v_1,v_2,w_1,w_2,t_1,t_2,ph_1,ph_2,tke_1,tke_2,moist,chem,tracer,scalar;4:mu_1,mu_2
 halo      HALO_EM_D3_5 dyn_em 48:u_1,u_2,v_1,v_2,w_1,w_2,t_1,t_2,ph_1,ph_2,tke_1,tke_2,moist,chem,tracer,scalar;4:mu_1,mu_2
 halo      HALO_EM_E_3 dyn_em 24:u_1,u_2,v_1,v_2,w_1,w_2,t_1,t_2,ph_1,ph_2,tke_1,tke_2,;4:mu_1,mu_2

dyn_em/solve_em.F

@@ -41,7 +41,7 @@ SUBROUTINE solve_em ( grid , config_flags  &
                  ,period_bdy_em_d_sub,period_bdy_em_e_sub,period_bdy_em_moist2_sub         &
                  ,period_bdy_em_moist_old_sub,period_bdy_em_moist_sub                      &
                  ,period_bdy_em_scalar2_sub,period_bdy_em_scalar_old_sub                   &
-                 ,period_bdy_em_scalar_sub,period_bdy_em_tke_old_sub                       &
+                 ,period_bdy_em_scalar_sub,period_bdy_em_tke_sub,period_bdy_em_tke_old_sub &
                  ,period_bdy_em_tracer2_sub,period_bdy_em_tracer_old_sub                   &
                  ,period_bdy_em_tracer_sub,period_em_da_sub,period_em_hydro_uv_sub         &
                  ,halo_em_f_sub,halo_em_init_4_sub,halo_em_thetam_sub,period_em_thetam_sub
@@ -3183,6 +3183,7 @@ BENCH_END(calc_p_rho_tim)
 #  include "PERIOD_BDY_EM_CHEM2.inc"
 #  include "PERIOD_BDY_EM_TRACER2.inc"
 #  include "PERIOD_BDY_EM_SCALAR2.inc"
+#  include "PERIOD_BDY_EM_TKE.inc"
 #endif
 
 BENCH_START(bc_end_tim)