Fixed line endings to linux.

pbs_sub.sh

-#!/bin/bash
-### Job Name
-#PBS -N lasso-o
-
-### Account name (project code)
-#PBS -A arm
-
-### Specify the group name under which the job is	to run.
-### If not set, the group_list defaults to the primary group
-### of the user under	which the job will be run.
-#PBS -W group_list=cades-arm
-
-### Max time limit
-#PBS -l walltime=01:00:00
-
-### Queue
-#PBS -q arm_high_mem
-
-### Merge & persist std output and std error files
-#PBS -j oe
-#PBS -k eod
-
-### Request 1 node with 1 processor per node
-#PBS -l nodes=1:ppn=1
-
-### A QoS is a classification that determines what kind of resources your job can use.
-#PBS -l qos=std
-
-./run.sh
+#!/bin/bash
+### Job Name
+#PBS -N lasso-o
+
+### Account name (project code)
+#PBS -A arm
+
+### Specify the group name under which the job is	to run.
+### If not set, the group_list defaults to the primary group
+### of the user under	which the job will be run.
+#PBS -W group_list=cades-arm
+
+### Max time limit
+#PBS -l walltime=01:00:00
+
+### Queue
+#PBS -q arm_high_mem
+
+### Merge & persist std output and std error files
+#PBS -j oe
+#PBS -k eod
+
+### Request 1 node with 1 processor per node
+#PBS -l nodes=1:ppn=1
+
+### A QoS is a classification that determines what kind of resources your job can use.
+#PBS -l qos=std
+
+./run.sh

run.sh

@@ -113,14 +113,10 @@ run_shifter() {
 
    shifter \
    --env=BEGIN_DATETIME=20180710.115900 \
-   --volume=/global/homes/c/carinal/run-lasso-o_shcu/data/inputs:/data/lasso/inputs \
-   --volume=/global/homes/c/carinal/run-lasso-o_shcu/data/outputs:/data/lasso/outputs \
+   --volume=/global/cscratch1/sd/carinal/test-in:/data/lasso/inputs \
+   --volume=/global/cscratch1/sd/carinal/test-out:/data/lasso/outputs \
    --image=docker:registry.gitlab.com/gov-doe-arm/docker/lasso-o_shcu -- /apps/base/python3.6/bin/python /bin/run_lasso.py
 
-
-# /apps/base/python3.6/bin/python /bin/run_lasso.py
-#srun -C gpu shifter run --mount=type=bind,source=$HOME,destination=$HOME debian ls -l $HOME
-
 }
 
 argument="$1"